SIA: Scalable Interoperable Annotation Server
نویسندگان
چکیده
Recent years showed a strong increase in biomedical sciences and an inherent increase in publication volume. Extraction of specific information from these sources requires highly sophisticated text miningand information extraction-tools. However, the integration of freely available tools into customized workflows is often cumbersome and difficult. We describe SIA, our contribution to the BeCalm-TIPS task, a scalable, extensible, and robust annotation service. The system currently covers three named entity types (i.e., Mutations, Diseases, and miRNA) and is freely available under Apache 2.0 license at https://github.com/Erechtheus/sia.
منابع مشابه
Performance and interoperability assessment of Disease Extract Annotation Server (DEAS)
Over the past decade, many biomedical information extraction tools have been developed. Some of these tools are provided with access via web services. However, many of these tools are not interoperable with web services performance not evaluated. In this study, we implemented and evaluated the performance of an interoperable web service that annotates disease entities called Disease Extract Ann...
متن کاملM-GIS - Mobile and Interoperable Access to Geographic Information
This paper describes an architecture which can be used to access geographic information from mobile devices with limited display and processing characteristics, such as Personal Digital Assistants (PDA) or Mobile Phones. The information may come from different sources leading to an interoperable solution. M-GIS obtains geographic information from sources described using Geography Markup Languag...
متن کاملScalable Image Annotation by Summarizing Training Samples into Labeled Prototypes
By increasing the number of images, it is essential to provide fast search methods and intelligent filtering of images. To handle images in large datasets, some relevant tags are assigned to each image to for describing its content. Automatic Image Annotation (AIA) aims to automatically assign a group of keywords to an image based on visual content of the image. AIA frameworks have two main sta...
متن کاملVARNA: Interactive drawing and editing of the RNA secondary structure
DESCRIPTION VARNA is a tool for the automated drawing, visualization and annotation of the secondary structure of RNA, designed as a companion software for web servers and databases. FEATURES VARNA implements four drawing algorithms, supports input/output using the classic formats dbn, ct, bpseq and RNAML and exports the drawing as five picture formats, either pixel-based (JPEG, PNG) or vecto...
متن کاملJPEG2000: Standard for Interactive Imaging
JPEG2000 is the latest image compression standard to emerge from the Joint Photographic Experts Group (JPEG) working under the auspices of the International Standards Organization. Although the new standard does offer superior compression performance to JPEG, JPEG2000 provides a whole new way of interacting with compressed imagery in a scalable and interoperable fashion. This paper provides a t...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
عنوان ژورنال:
دوره شماره
صفحات -
تاریخ انتشار 2017